| 1st leg | 2nd leg | Agg | |
| Benfica (Portugal) vs Trabzonspor (Turkey) | 2-0 | ||
| FC Copenhagen (Denmark) vs Shamrock (Ireland) | 1-0 | ||
| HJK Helsinki (Finland) vs Dinamo Zagreb (Croatia) | 1-2 | ||
| Maccabi Haifa (Israel) vs NK Maribor (Slovenia) | 2-1 | ||
| Odense OB (Denmark) vs Panathinaikos (Greece) | 1-1 | ||
| Rosenborg (Norway) vs Viktoria Plzen (Czech Rep.) | 0-1 | ||
| Standard Liege (Belgium) vs FC Zurich (Switzerland) | 1-1 |
| Played Tuesday | 1st leg | 2nd leg | Agg |
| APOEL Nicosia (Cyprus) vs S. Bratislava (Slovakia) | 0-0 | ||
| Dynamo Kyiv (Ukraine) vs Rubin Kazan (Russia) | 0-2 | ||
| FC Twente (Holland) vs Vaslui (Romania) | 2-0 | ||
| FK Ekranas (Lithuania) vs BATE Borisov (Belarus) | 0-0 | ||
| Genk (Belgium) vs FK Partizan (Serbia) | 2-1 | ||
| Litex Lovech (Bulgaria) vs Wisla Krakow (Poland) | 1-2 | ||
| Rangers (Scotland) vs Malmo (Sweden) | 0-1 | ||
| Zestafoni (Georgia) vs Sturm Graz (Austria) | 1-1 |
Second legs: August 2/3.
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